Read the Docs build information Build id: 5621677 Project: bioconda-recipes-demo Version: latest Commit: e20b35005504457e6eeb4811011d238e419cafa6 Date: 2017-06-28T19:22:45.268955Z State: finished Success: False [rtd-command-info] start-time: 2017-06-28T19:23:01.911625, end-time: 2017-06-28T19:23:05.211033, duration: 3, exit-code: 0 python3.5 -mvirtualenv --no-site-packages --no-download Using base prefix '/usr' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/bin/python3.5 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/bin/python Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2017-06-28T19:23:05.294583, end-time: 2017-06-28T19:23:50.187264, duration: 44, exit-code: 0 python pip install --use-wheel -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip sphinx==1.5.3 Pygments==2.2.0 setuptools==28.8.0 docutils==0.13.1 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 readthedocs-sphinx-ext<0.6 sphinx-rtd-theme<0.3 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 Collecting sphinx==1.5.3 Downloading Sphinx-1.5.3-py2.py3-none-any.whl (1.6MB) Collecting Pygments==2.2.0 Downloading Pygments-2.2.0-py2.py3-none-any.whl (841kB) Requirement already up-to-date: setuptools==28.8.0 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages Collecting docutils==0.13.1 Downloading docutils-0.13.1-py3-none-any.whl (536kB) Collecting mkdocs==0.15.0 Downloading mkdocs-0.15.0-py2.py3-none-any.whl (966kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861kB) Collecting pillow==2.6.1 Downloading Pillow-2.6.1.zip (7.5MB) Collecting readthedocs-sphinx-ext<0.6 Downloading readthedocs_sphinx_ext-0.5.5-py2.py3-none-any.whl Collecting sphinx-rtd-theme<0.3 Downloading sphinx_rtd_theme-0.2.4-py2.py3-none-any.whl (1.4MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.10-py2.py3-none-any.whl Collecting commonmark==0.5.4 Downloading CommonMark-0.5.4.tar.gz (120kB) Collecting recommonmark==0.4.0 Downloading recommonmark-0.4.0-py2.py3-none-any.whl Collecting six>=1.5 (from sphinx==1.5.3) Downloading six-1.10.0-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx==1.5.3) Downloading snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB) Collecting imagesize (from sphinx==1.5.3) Downloading imagesize-0.7.1-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx==1.5.3) Downloading requests-2.18.1-py2.py3-none-any.whl (88kB) Collecting babel!=2.0,>=1.3 (from sphinx==1.5.3) Downloading Babel-2.4.0-py2.py3-none-any.whl (6.8MB) Collecting Jinja2>=2.3 (from sphinx==1.5.3) Downloading Jinja2-2.9.6-py2.py3-none-any.whl (340kB) Collecting mkdocs-bootswatch>=0.1.0 (from mkdocs==0.15.0) Downloading mkdocs_bootswatch-0.4.0-py3-none-any.whl (4.4MB) Collecting click>=4.0 (from mkdocs==0.15.0) Downloading click-6.7-py2.py3-none-any.whl (71kB) Collecting mkdocs-bootstrap>=0.1.1 (from mkdocs==0.15.0) Downloading mkdocs-bootstrap-0.1.1.tar.gz (363kB) Collecting livereload>=2.3.2 (from mkdocs==0.15.0) Downloading livereload-2.5.1.tar.gz Collecting Markdown>=2.3.1 (from mkdocs==0.15.0) Downloading Markdown-2.6.8.tar.gz (307kB) Collecting tornado>=4.1 (from mkdocs==0.15.0) Downloading tornado-4.5.1.tar.gz (483kB) Collecting PyYAML>=3.10 (from mkdocs==0.15.0) Downloading PyYAML-3.12.tar.gz (253kB) Collecting nilsimsa>=0.3.7 (from readthedocs-sphinx-ext<0.6) Downloading nilsimsa-0.3.8.tar.gz (276kB) Collecting urllib3<1.22,>=1.21.1 (from requests>=2.0.0->sphinx==1.5.3) Downloading urllib3-1.21.1-py2.py3-none-any.whl (131kB) Collecting idna<2.6,>=2.5 (from requests>=2.0.0->sphinx==1.5.3) Downloading idna-2.5-py2.py3-none-any.whl (55kB) Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx==1.5.3) Downloading chardet-3.0.4-py2.py3-none-any.whl (133kB) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx==1.5.3) Downloading certifi-2017.4.17-py2.py3-none-any.whl (375kB) Collecting pytz>=0a (from babel!=2.0,>=1.3->sphinx==1.5.3) Downloading pytz-2017.2-py2.py3-none-any.whl (484kB) Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx==1.5.3) Downloading MarkupSafe-1.0.tar.gz Building wheels for collected packages: mock, pillow, commonmark, mkdocs-bootstrap, livereload, Markdown, tornado, PyYAML, nilsimsa, MarkupSafe Running setup.py bdist_wheel for mock: started Running setup.py bdist_wheel for mock: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/b2/f8/fe/920b7d3b279878045354cde14646f73864cf944501f19e4a1b Running setup.py bdist_wheel for pillow: started Running setup.py bdist_wheel for pillow: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/d0/3d/6f/4a3dbe290c7053073e6c32734c146d7174f2ad7675030b6137 Running setup.py bdist_wheel for commonmark: started Running setup.py bdist_wheel for commonmark: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/fd/3a/ea/9ead7944d8ba3771888487ca4f6ef39bcde9fd4e986c32f442 Running setup.py bdist_wheel for mkdocs-bootstrap: started Running setup.py bdist_wheel for mkdocs-bootstrap: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/6a/6b/d4/b947c6453aae64d38ab0e3b70cb71a60cb6bb7d0a184a4b727 Running setup.py bdist_wheel for livereload: started Running setup.py bdist_wheel for livereload: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/71/95/bf/6ccaa70b36701dd3fa337296d7ec6614bf14f51d58bc3a4a7a Running setup.py bdist_wheel for Markdown: started Running setup.py bdist_wheel for Markdown: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/85/a7/08/33ee5cd488d0365d8bed79d1d4e5c28dd3fbfc7f6d0ad4bb09 Running setup.py bdist_wheel for tornado: started Running setup.py bdist_wheel for tornado: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/84/83/cd/6a04602633457269d161344755e6766d24307189b7a67ff4b7 Running setup.py bdist_wheel for PyYAML: started Running setup.py bdist_wheel for PyYAML: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/2c/f7/79/13f3a12cd723892437c0cfbde1230ab4d82947ff7b3839a4fc Running setup.py bdist_wheel for nilsimsa: started Running setup.py bdist_wheel for nilsimsa: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/77/f8/25/539c7b52ecbfcb7ed9b6c7189f9fdde48706c41fe529a64c9f Running setup.py bdist_wheel for MarkupSafe: started Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/88/a7/30/e39a54a87bcbe25308fa3ca64e8ddc75d9b3e5afa21ee32d57 Successfully built mock pillow commonmark mkdocs-bootstrap livereload Markdown tornado PyYAML nilsimsa MarkupSafe Installing collected packages: Pygments, six, snowballstemmer, docutils, imagesize, alabaster, urllib3, idna, chardet, certifi, requests, pytz, babel, MarkupSafe, Jinja2, sphinx, mkdocs-bootswatch, click, mkdocs-bootstrap, tornado, livereload, Markdown, PyYAML, mkdocs, mock, pillow, nilsimsa, readthedocs-sphinx-ext, sphinx-rtd-theme, commonmark, recommonmark Successfully installed Jinja2-2.9.6 Markdown-2.6.8 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.2.0 alabaster-0.7.10 babel-2.4.0 certifi-2017.4.17 chardet-3.0.4 click-6.7 commonmark-0.5.4 docutils-0.13.1 idna-2.5 imagesize-0.7.1 livereload-2.5.1 mkdocs-0.15.0 mkdocs-bootstrap-0.1.1 mkdocs-bootswatch-0.4.0 mock-1.0.1 nilsimsa-0.3.8 pillow-2.6.1 pytz-2017.2 readthedocs-sphinx-ext-0.5.5 recommonmark-0.4.0 requests-2.18.1 six-1.10.0 snowballstemmer-1.2.1 sphinx-1.5.3 sphinx-rtd-theme-0.2.4 tornado-4.5.1 urllib3-1.21.1 [rtd-command-info] start-time: 2017-06-28T19:23:50.290273, end-time: 2017-06-28T19:24:02.885860, duration: 12, exit-code: 0 python pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip -r/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt Collecting git+https://github.com/conda/conda-build.git@2.0.1 (from -r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Cloning https://github.com/conda/conda-build.git (to 2.0.1) to /tmp/pip-f3n1f_80-build Collecting Sphinx==1.4.6 (from -r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Downloading Sphinx-1.4.6-py2.py3-none-any.whl (1.6MB) Collecting sphinx-rtd-theme==0.1.9 (from -r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 2)) Downloading sphinx_rtd_theme-0.1.9-py3-none-any.whl (693kB) Collecting sphinxcontrib-lunrsearch==0.2 (from -r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 3)) Downloading sphinxcontrib_lunrsearch-0.2-py2.py3-none-any.whl Collecting ruamel.yaml==0.12.13 (from -r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 5)) Downloading ruamel.yaml-0.12.13-cp35-cp35m-manylinux1_x86_64.whl (531kB) Collecting conda (from conda-build==2.0.1->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Downloading conda-4.3.16.tar.gz (299kB) Requirement already satisfied: Jinja2>=2.3 in 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/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from Sphinx==1.4.6->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from Sphinx==1.4.6->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from Sphinx==1.4.6->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from Sphinx==1.4.6->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from Sphinx==1.4.6->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 1)) Collecting pycosat>=0.6.1 (from conda->conda-build==2.0.1->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Downloading pycosat-0.6.1.tar.gz (59kB) Requirement already satisfied: requests>=2.12.4 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from conda->conda-build==2.0.1->-r 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/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from requests>=2.12.4->conda->conda-build==2.0.1->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Requirement already satisfied: urllib3<1.22,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from requests>=2.12.4->conda->conda-build==2.0.1->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages (from requests>=2.12.4->conda->conda-build==2.0.1->-r /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/requirements.txt (line 4)) Building wheels for collected packages: conda, pycosat Running setup.py bdist_wheel for conda: started Running setup.py bdist_wheel for conda: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/b2/a6/11/e17f2ad0c38f0e03fbb4af93b0e0e6e913275a2aa3fcf88fed Running setup.py bdist_wheel for pycosat: started Running setup.py bdist_wheel for pycosat: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/.cache/pip/wheels/27/79/f2/5b1877314d8927a1068e924f363a7dae6b9d4d61ebf420b7f8 Successfully built conda pycosat Installing collected packages: Sphinx, sphinx-rtd-theme, sphinxcontrib-lunrsearch, ruamel.yaml, pycosat, conda, conda-build Found existing installation: Sphinx 1.5.3 Uninstalling Sphinx-1.5.3: Successfully uninstalled Sphinx-1.5.3 Found existing installation: sphinx-rtd-theme 0.2.4 Uninstalling sphinx-rtd-theme-0.2.4: Successfully uninstalled sphinx-rtd-theme-0.2.4 Running setup.py install for conda-build: started Running setup.py install for conda-build: finished with status 'done' Successfully installed Sphinx-1.4.6 conda-4.3.16 conda-build-2.0.1 pycosat-0.6.1 ruamel.yaml-0.12.13 sphinx-rtd-theme-0.1.9 sphinxcontrib-lunrsearch-0.2 [rtd-command-info] start-time: 2017-06-28T19:24:03.630074, end-time: 2017-06-28T19:24:03.678909, duration: 0, exit-code: 0 cat docs/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # bioconda-recipes documentation build configuration file, created by # sphinx-quickstart on Sun Jan 31 13:31:02 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os import sphinx_rtd_theme # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. sys.path.insert(0, os.path.abspath('.')) def setup(app): app.add_stylesheet("custom.css") # -- Buld READMEs for all recipes ----------------------------------------- #import .generate_docs #print('Generating package READMEs...') #generate_docs.main() # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'generate_docs', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'Bioconda' copyright = '2016, The Bioconda Team' author = 'The Bioconda Team' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. # version = '1.0.0' # The full version, including alpha/beta/rc tags. # release = '1.0.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. html_theme_options = { 'logo_only': True } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. html_logo = '../logo/bioconda_monochrome_small.png' # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr' #html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # Now only 'ja' uses this config value #html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. #html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'bioconda-recipesdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', # Latex figure (float) alignment #'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'bioconda-recipes.tex', 'bioconda-recipes Documentation', 'bioconda', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'bioconda-recipes', 'bioconda-recipes Documentation', [author], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'bioconda-recipes', 'bioconda-recipes Documentation', author, 'bioconda-recipes', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'https://docs.python.org/': None} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = 'https://media.readthedocs.org/static/' else: websupport2_static_url = 'https://media.readthedocs.org//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "https://media.readthedocs.org/", 'PRODUCTION_DOMAIN': "readthedocs.org", 'versions': [ ("latest", "/en/latest/"), ("docs", "/en/docs/"), ], 'downloads': [ ("pdf", "//readthedocs.org/projects/bioconda-recipes-demo/downloads/pdf/latest/"), ("htmlzip", "//readthedocs.org/projects/bioconda-recipes-demo/downloads/htmlzip/latest/"), ("epub", "//readthedocs.org/projects/bioconda-recipes-demo/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'bioconda-recipes-demo', 'name': u'bioconda-recipes-demo', 'rtd_language': u'en', 'canonical_url': 'http://bioconda-recipes-demo.readthedocs.io/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.org', 'github_user': 'ostrokach', 'github_repo': 'recipes', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'e20b3500', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2017-06-28T19:24:03.808177, end-time: 2017-06-28T19:24:04.766844, duration: 0, exit-code: 1 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.4.6 making output directory... Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/generate_docs.py", line 4, in from conda_build.metadata import MetaData File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/conda_build/metadata.py", line 9, in from .conda_interface import iteritems, PY3, text_type File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/conda_build/conda_interface.py", line 17, in from conda.install import (delete_trash, is_linked, linked, linked_data, move_to_trash, # NOQA ImportError: cannot import name 'move_to_trash' Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/sphinx/application.py", line 473, in setup_extension mod = __import__(extension, None, None, ['setup']) File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/generate_docs.py", line 8, in raise e File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/checkouts/latest/docs/generate_docs.py", line 4, in from conda_build.metadata import MetaData File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/conda_build/metadata.py", line 9, in from .conda_interface import iteritems, PY3, text_type File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/conda_build/conda_interface.py", line 17, in from conda.install import (delete_trash, is_linked, linked, linked_data, move_to_trash, # NOQA ImportError: cannot import name 'move_to_trash' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/sphinx/cmdline.py", line 243, in main opts.warningiserror, opts.tags, opts.verbosity, opts.jobs) File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/sphinx/application.py", line 163, in __init__ self.setup_extension(extension) File "/home/docs/checkouts/readthedocs.org/user_builds/bioconda-recipes-demo/envs/latest/lib/python3.5/site-packages/sphinx/application.py", line 477, in setup_extension err) sphinx.errors.ExtensionError: Could not import extension generate_docs (exception: cannot import name 'move_to_trash') Extension error: Could not import extension generate_docs (exception: cannot import name 'move_to_trash')